New York City:

• The Metropolitan Museum of Art
  • Largest Art Museum in the US
• The MET Cloisters
• Solomon R. Guggenheim Museum
• Whitney Museum of American Art
• The Frick
• Museum of Modern Art
• MoMA PS1
• The Neue Galerie
• New Museum
• The Jewish Museum
• FIT Museum
• Rubin Museum of Art
• American Folk Art Museum
• Museum of the City of New York
• Asia Society and Museum
• Leslie-Lohman Museum of Art
• Jacques Marchais
• China Institute and Art Gallery
• Yeshiva University Museum

Bronx

• Bronx Museum of the Arts

Brooklyn

• Brooklyn Museum of Art

Glens Falls

• Hyde Collection

Buffalo

• AKG Art Museum (one of the oldest public art museums in the US!)
• Burchfield Penney Art Center
• Hallwalls Contemporary Arts Center

Albany:

• Albany Institute of History and Art

Binghamton

• Binghamton University Art Museum

Ogdensburg

• Frederic Remington Art Museum

Syracuse

• Everson Museum of Art
• Wilson Art Gallery

Plattsburgh

• State Art Museum SUNY

Oneonta:

• Yager Museum of Art and Culture at Hartwick College

Fredonia

• Rockefeller Arts Center

Hudson Valley

• Storm King Art Center
• Caramoor Center for Music and the Arts
• Edward Hopper House
• Hudson River Museum
• Frances Lehman Loeb Art Center
• The Hammond Museum and Japanese Stroll Garden
• Katonah Museum of Art
• Barrett Art Center

Bonaventure

• Regina A Quick Center for the Arts

Long Island:

• Huntington -The Heckscher Museum of Art
• Roslyn Harbor – Nassau County Museum of Art
• Islip Art Museum

Finger Lakes

• Arnot Art Museum
• Lederer Art Gallery

Saratoga Springs

• Tang Teaching Museum and Art Gallery
• Saratoga Arts

Utica:

• Munson-Williams-Proctor Arts Institute

Corning:

• Rockwell Museum

Canajoharie

• Arkell Museum

Chautauqua

• Chautauqua Institution

Cooperstown

• Fenimore Art Museum

Salamanca

• Seneca-Iroquois National Museum

Niagara

• Castellani Art Museum of Niagara University

For a complete list of New York museums click on their official travel website